Package: ggseqlogo 0.1

ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Authors:Omar Wagih

ggseqlogo_0.1.tar.gz
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ggseqlogo_0.1.tgz(r-4.4-any)ggseqlogo_0.1.tgz(r-4.3-any)
ggseqlogo_0.1.tar.gz(r-4.5-noble)ggseqlogo_0.1.tar.gz(r-4.4-noble)
ggseqlogo_0.1.tgz(r-4.4-emscripten)ggseqlogo_0.1.tgz(r-4.3-emscripten)
ggseqlogo.pdf |ggseqlogo.html✨
ggseqlogo/json (API)

# Install 'ggseqlogo' in R:
install.packages('ggseqlogo', repos = c('https://omarwagih.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/omarwagih/ggseqlogo/issues

Datasets:
  • pfms_dna - List of position frequency matrices for transcription factors
  • seqs_aa - List of aligned kinase-substrate binding sequences
  • seqs_dna - List of aligned transcription factor binding sequences

On CRAN:

11.64 score 207 stars 10 packages 732 scripts 3.2k downloads 49 mentions 6 exports 28 dependencies

Last updated 1 months agofrom:9c26c0b205. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-winNOTENov 12 2024
R-4.5-linuxNOTENov 12 2024
R-4.4-winOKNov 12 2024
R-4.4-macOKNov 12 2024
R-4.3-winOKNov 12 2024
R-4.3-macOKNov 12 2024

Exports:geom_logoggseqlogolist_col_schemeslist_fontsmake_col_schemetheme_logo

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

ggseqlogo introduction

Omar Wagih

Rendered fromggseqlogo_introduction.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2023-11-26
Started: 2017-06-13