Package: ggseqlogo 0.1

ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Authors:Omar Wagih

ggseqlogo_0.1.tar.gz
ggseqlogo_0.1.zip(r-4.5)ggseqlogo_0.1.zip(r-4.4)ggseqlogo_0.1.zip(r-4.3)
ggseqlogo_0.1.tgz(r-4.5-any)ggseqlogo_0.1.tgz(r-4.4-any)ggseqlogo_0.1.tgz(r-4.3-any)
ggseqlogo_0.1.tar.gz(r-4.5-noble)ggseqlogo_0.1.tar.gz(r-4.4-noble)
ggseqlogo_0.1.tgz(r-4.4-emscripten)ggseqlogo_0.1.tgz(r-4.3-emscripten)
ggseqlogo.pdf |ggseqlogo.html✨
ggseqlogo/json (API)

# Install 'ggseqlogo' in R:
install.packages('ggseqlogo', repos = c('https://omarwagih.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/omarwagih/ggseqlogo/issues

Datasets:
  • pfms_dna - List of position frequency matrices for transcription factors
  • seqs_aa - List of aligned kinase-substrate binding sequences
  • seqs_dna - List of aligned transcription factor binding sequences

On CRAN:

Conda:

11.48 score 211 stars 13 packages 786 scripts 4.7k downloads 49 mentions 6 exports 28 dependencies

Last updated 5 months agofrom:9c26c0b205. Checks:6 OK, 3 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 12 2025
R-4.5-winNOTEMar 12 2025
R-4.5-macNOTEMar 12 2025
R-4.5-linuxNOTEMar 12 2025
R-4.4-winOKMar 12 2025
R-4.4-macOKMar 12 2025
R-4.4-linuxOKMar 12 2025
R-4.3-winOKMar 12 2025
R-4.3-macOKMar 12 2025

Exports:geom_logoggseqlogolist_col_schemeslist_fontsmake_col_schemetheme_logo

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

ggseqlogo introduction

Omar Wagih

Rendered fromggseqlogo_introduction.Rmdusingknitr::rmarkdownon Mar 12 2025.

Last update: 2023-11-26
Started: 2017-06-13