Package: ggseqlogo 0.1

ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Authors:Omar Wagih

ggseqlogo_0.1.tar.gz
ggseqlogo_0.1.zip(r-4.7)ggseqlogo_0.1.zip(r-4.6)ggseqlogo_0.1.zip(r-4.5)
ggseqlogo_0.1.tgz(r-4.6-any)ggseqlogo_0.1.tgz(r-4.5-any)
ggseqlogo_0.1.tar.gz(r-4.7-any)ggseqlogo_0.1.tar.gz(r-4.6-any)
ggseqlogo_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ggseqlogo/json (API)

# Install 'ggseqlogo' in R:
install.packages('ggseqlogo', repos = c('https://omarwagih.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/omarwagih/ggseqlogo/issues

Datasets:
  • pfms_dna - List of position frequency matrices for transcription factors
  • seqs_aa - List of aligned kinase-substrate binding sequences
  • seqs_dna - List of aligned transcription factor binding sequences

On CRAN:

Conda:

11.76 score 227 stars 10 packages 1.1k scripts 7.8k downloads 49 mentions 6 exports 17 dependencies

Last updated from:af4dc0c41a. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE122
source / vignettesOK169
linux-release-x86_64NOTE159
macos-release-arm64NOTE174
macos-oldrel-arm64NOTE203
windows-develNOTE139
windows-releaseNOTE241
windows-oldrelNOTE81
wasm-releaseOK109

Exports:geom_logoggseqlogolist_col_schemeslist_fontsmake_col_schemetheme_logo

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

ggseqlogo introduction

Omar Wagih

Rendered fromggseqlogo_introduction.Rmdusingknitr::rmarkdownon May 15 2026.

Last update: 2023-11-26
Started: 2017-06-13