Package: ggseqlogo 0.1

ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Authors:Omar Wagih

ggseqlogo_0.1.tar.gz
ggseqlogo_0.1.zip(r-4.7)ggseqlogo_0.1.zip(r-4.6)ggseqlogo_0.1.zip(r-4.5)
ggseqlogo_0.1.tgz(r-4.6-any)ggseqlogo_0.1.tgz(r-4.5-any)
ggseqlogo_0.1.tar.gz(r-4.7-any)ggseqlogo_0.1.tar.gz(r-4.6-any)
ggseqlogo_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ggseqlogo/json (API)

# Install 'ggseqlogo' in R:

install.packages('ggseqlogo', repos = c('https://omarwagih.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/omarwagih/ggseqlogo/issues

Datasets:

pfms_dna - List of position frequency matrices for transcription factors
seqs_aa - List of aligned kinase-substrate binding sequences
seqs_dna - List of aligned transcription factor binding sequences

On CRAN:

11.89 score 229 stars 11 packages 1.2k scripts 8.3k downloads 49 mentions 6 exports 17 dependencies

Last updated from:af4dc0c41a. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	127
source / vignettes	OK	198
linux-release-x86_64	NOTE	128
macos-release-arm64	NOTE	122
macos-oldrel-arm64	NOTE	170
windows-devel	NOTE	97
windows-release	NOTE	72
windows-oldrel	NOTE	70
wasm-release	OK	99

Exports:geom_logo ggseqlogo list_col_schemes list_fonts make_col_scheme theme_logo

Dependencies:cli cpp11 farver ggplot2 glue gtable isoband labeling lifecycle R6 RColorBrewer rlang S7 scales vctrs viridisLite withr

ggseqlogo introduction

Rendered fromggseqlogo_introduction.Rmdusingknitr::rmarkdown

Last update: 2023-11-26
Started: 2017-06-13

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Plots sequence logo as a layer on ggplot	geom_logo
Quick sequence logo plot	ggseqlogo
List color schemes available in ggseqlogo	list_col_schemes
List fonts available in ggseqlogo	list_fonts
Create new sequence logo color scheme	make_col_scheme
List of position frequency matrices for transcription factors	pfms_dna
List of aligned kinase-substrate binding sequences	seqs_aa
List of aligned transcription factor binding sequences	seqs_dna
ggseqlogo custom theme	theme_logo