{
  "_id": "6a55d853ff0138dec5d69a8e",
  "Package": "ggseqlogo",
  "Type": "Package",
  "Title": "A 'ggplot2' Extension for Drawing Publication-Ready Sequence\nLogos",
  "Version": "0.1",
  "Date": "2017-07-25",
  "Author": "Omar Wagih",
  "Maintainer": "Omar Wagih <omarwagih@gmail.com>",
  "Description": "The extensive range of functions provided by this package\nmakes it possible to draw highly versatile sequence logos.\nFeatures include, but not limited to, modifying colour schemes\nand fonts used to draw the logo, generating multiple logo\nplots, and aiding the visualisation with annotations. Sequence\nlogos can easily be combined with other plots 'ggplot2' plots.",
  "License": "LGPL",
  "URL": "https://github.com/omarwagih/ggseqlogo",
  "BugReports": "https://github.com/omarwagih/ggseqlogo/issues",
  "Encoding": "latin1",
  "RoxygenNote": "6.0.1",
  "VignetteBuilder": "knitr",
  "Repository": "https://omarwagih.r-universe.dev",
  "Date/Publication": "2026-02-14 06:17:47 UTC",
  "RemoteUrl": "https://github.com/omarwagih/ggseqlogo",
  "RemoteRef": "HEAD",
  "RemoteSha": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-14 06:29:03 UTC",
    "User": "root"
  },
  "_user": "omarwagih",
  "_type": "src",
  "_file": "ggseqlogo_0.1.tar.gz",
  "_fileid": "https://r2.ropensci.org/a5b7d5451b5aa403a0436a130831e5825bbafe85c8925c343e3e21adb9bce1ea",
  "_filesize": 836005,
  "_sha256": "a5b7d5451b5aa403a0436a130831e5825bbafe85c8925c343e3e21adb9bce1ea",
  "_expires": "2026-10-22T06:33:53.000Z",
  "_created": "2026-07-14T06:29:03.000Z",
  "_published": "2026-07-14T06:33:55.052Z",
  "_jobs": [
    {
      "job": 87016030901,
      "time": 138,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8302270559"
    },
    {
      "job": 87016030944,
      "time": 115,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8302262947"
    },
    {
      "job": 87016030922,
      "time": 166,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8302301069"
    },
    {
      "job": 87016030935,
      "time": 150,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8302300183"
    },
    {
      "job": 87015590050,
      "time": 172,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8302227776"
    },
    {
      "job": 87016030907,
      "time": 101,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8302258825"
    },
    {
      "job": 87016030952,
      "time": 81,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "8302252574"
    },
    {
      "job": 87016030996,
      "time": 74,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "8302250363"
    },
    {
      "job": 87016031013,
      "time": 101,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "8302258651"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555",
  "_status": "success",
  "_upstream": "https://github.com/omarwagih/ggseqlogo",
  "_commit": {
    "id": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
    "author": "Omar Wagih <omarwagih@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update README.md",
    "time": 1771049867
  },
  "_maintainer": {
    "name": "Omar Wagih",
    "email": "omarwagih@gmail.com",
    "login": "omarwagih",
    "description": "",
    "uuid": 1717767
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "omarwagih",
  "_selfowned": true,
  "_usedby": 11,
  "_updates": [
    {
      "week": "2026-07",
      "n": 1
    }
  ],
  "_tags": [],
  "_stars": 229,
  "_contributors": [
    {
      "user": "omarwagih",
      "count": 37,
      "uuid": 1717767
    },
    {
      "user": "cvaske",
      "count": 1,
      "uuid": 100392
    },
    {
      "user": "aviezerl",
      "count": 1,
      "uuid": 18175550
    }
  ],
  "_userbio": {
    "uuid": 1717767,
    "type": "user",
    "name": "Omar Wagih",
    "followers": 71
  },
  "_downloads": {
    "count": 5390,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ggseqlogo"
  },
  "_mentions": 49,
  "_devurl": "https://github.com/omarwagih/ggseqlogo",
  "_searchresults": 1242,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ggseqlogo.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/omarwagih/ggseqlogo",
  "_realowner": "omarwagih",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.0.1",
      "date": "2017-06-13"
    },
    {
      "version": "0.1",
      "date": "2017-07-25"
    },
    {
      "version": "0.2",
      "date": "2024-02-09"
    },
    {
      "version": "0.2.2",
      "date": "2025-12-22"
    }
  ],
  "_exports": [
    "geom_logo",
    "ggseqlogo",
    "list_col_schemes",
    "list_fonts",
    "make_col_scheme",
    "theme_logo"
  ],
  "_datasets": [
    {
      "name": "pfms_dna",
      "title": "List of position frequency matrices for transcription factors",
      "object": "ggseqlogo_sample",
      "file": "ggseqlogo_sample.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "seqs_aa",
      "title": "List of aligned kinase-substrate binding sequences",
      "object": "ggseqlogo_sample",
      "file": "ggseqlogo_sample.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "seqs_dna",
      "title": "List of aligned transcription factor binding sequences",
      "object": "ggseqlogo_sample",
      "file": "ggseqlogo_sample.rda",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "geom_logo",
      "title": "Plots sequence logo as a layer on ggplot",
      "topics": [
        "geom_logo"
      ]
    },
    {
      "page": "ggseqlogo",
      "title": "Quick sequence logo plot",
      "topics": [
        "ggseqlogo"
      ]
    },
    {
      "page": "list_col_schemes",
      "title": "List color schemes available in ggseqlogo",
      "topics": [
        "list_col_schemes"
      ]
    },
    {
      "page": "list_fonts",
      "title": "List fonts available in ggseqlogo",
      "topics": [
        "list_fonts"
      ]
    },
    {
      "page": "make_col_scheme",
      "title": "Create new sequence logo color scheme",
      "topics": [
        "make_col_scheme"
      ]
    },
    {
      "page": "pfms_dna",
      "title": "List of position frequency matrices for transcription factors",
      "topics": [
        "pfms_dna"
      ]
    },
    {
      "page": "seqs_aa",
      "title": "List of aligned kinase-substrate binding sequences",
      "topics": [
        "seqs_aa"
      ]
    },
    {
      "page": "seqs_dna",
      "title": "List of aligned transcription factor binding sequences",
      "topics": [
        "seqs_dna"
      ]
    },
    {
      "page": "theme_logo",
      "title": "ggseqlogo custom theme",
      "topics": [
        "theme_logo"
      ]
    }
  ],
  "_readme": "https://github.com/omarwagih/ggseqlogo/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "ggseqlogo_introduction.Rmd",
      "filename": "ggseqlogo_introduction.html",
      "title": "ggseqlogo introduction",
      "author": "Omar Wagih",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2017-06-13 10:26:35",
      "modified": "2023-11-26 16:17:17",
      "commits": 2
    }
  ],
  "_score": 11.704059783245075,
  "_indexed": true,
  "_nocasepkg": "ggseqlogo",
  "_universes": [
    "omarwagih"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1",
      "date": "2026-07-14T06:31:13.000Z",
      "distro": "resolute",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/7b476fb6015e651454e0b4af838ea12a9338ec786fbb41fc0acca602289dfc4c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1",
      "date": "2026-07-14T06:30:51.000Z",
      "distro": "resolute",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/08b30829a3773bed3f337e58f86e3990041ca41697bc9cb9cf8a7b279e9ccafc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1",
      "date": "2026-07-14T06:32:59.000Z",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/1373713ba6a2f861166ba15c335e0561ad64d3a74eddc04368569dad45088316",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1",
      "date": "2026-07-14T06:32:53.000Z",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/6e877bc62e2e62b755d0ebc2a76ec4bc9be91bb9dbc9e7261a27759aa4bbd650",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1",
      "date": "2026-07-14T06:30:59.000Z",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/81c3b68a3ccd737f3e1e78542389681213e020adf44123f96a44e22d7003ff63",
      "status": "success",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1",
      "date": "2026-07-14T06:30:13.000Z",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/3873382645ba7bf384b98cb8b6beec0322cc6c896657f726e6acfbd9f985d74b",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1",
      "date": "2026-07-14T06:30:06.000Z",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/14e1687e337216c4702e7e89ac4d053f2e7fac6469a27f0013a8223887530411",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1",
      "date": "2026-07-14T06:30:31.000Z",
      "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986",
      "fileid": "https://r2.ropensci.org/3284195839ab1196e99585e93db6745b545987cc19f33601f794fb20fd6636fd",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/omarwagih/actions/runs/29311336555"
    }
  ]
}